3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03446

Details:

PFam ID : PF03446

PFam Domain Description : NAD binding domain of 6-phosphogluconate dehydrogenase

Number of Sequence in 50% Dataset : 455

Number of Sequence in Full Dataset : 3736

Average sequence length: 159.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03446	B8B1K2_ORYSI_3_97	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03446	B8B1K2_ORYSI_3_97	99.9

Sequence based PCA Plot of the family - PF03446 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=8
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay