3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03444

Details:

PFam ID : PF03444

PFam Domain Description : Winged helix-turn-helix transcription repressor, HrcA DNA-binding

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 264

Average sequence length: 76.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03444	C7P266_HALMD_7_85	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03444	C7P266_HALMD_7_85	100

Sequence based PCA Plot of the family - PF03444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=23 Length=8
Motif3 Start=37 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay