3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03443

Details:

PFam ID : PF03443

PFam Domain Description : Glycosyl hydrolase family 61

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 463

Average sequence length: 212.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03443	E5ADG7_LEPMC_1_94	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03443	D8Q5V3_SCHCM_1_282	100

Sequence based PCA Plot of the family - PF03443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=122 Length=8
Motif2 Start=150 Length=8
Motif3 Start=237 Length=11
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay