3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03442

Details:

PFam ID : PF03442

PFam Domain Description : Carbohydrate binding domain X2

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 145

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03442	E4SCF1_CALK2_148_234	49.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03442	D1ZDZ3_SORMK_385_477	100

Sequence based PCA Plot of the family - PF03442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=28 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay