3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03441

Details:

PFam ID : PF03441

PFam Domain Description : FAD binding domain of DNA photolyase

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 1718

Average sequence length: 235.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03441	D7RP11_PAROL_1_96	67.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03441	O49898_MOUSC_72_187	100

Sequence based PCA Plot of the family - PF03441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=108 Length=8
Motif3 Start=1 Length=14
Motif4 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay