3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03440

Details:

PFam ID : PF03440

PFam Domain Description : Aerolysin/Pertussis toxin (APT) domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 26

Average sequence length: 78.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03440	D9YUU4_AERHY_1_55	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03440	E3BQM2_9VIBR_22_102	100

Sequence based PCA Plot of the family - PF03440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay