3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03439

Details:

PFam ID : PF03439

PFam Domain Description : Early transcription elongation factor of RNA pol II, NGN section

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 206

Average sequence length: 82.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03439	E6N4E3_9ARCH_175_237	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03439	F2UPD0_9EUKA_219_310	100

Sequence based PCA Plot of the family - PF03439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay