3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03437

Details:

PFam ID : PF03437

PFam Domain Description : BtpA family

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 219

Average sequence length: 245.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03437	E9J7K8_SOLIN_1_66	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03437	E9C1D0_9EUKA_28_303	100

Sequence based PCA Plot of the family - PF03437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=198 Length=11
Motif3 Start=149 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay