3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03429

Details:

PFam ID : PF03429

PFam Domain Description : Major surface protein 1B

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 13

Average sequence length: 402.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03429	Q5PBR0_ANAMM_120_391	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03429	B9KHM4_ANAMF_1_618	100

Sequence based PCA Plot of the family - PF03429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay