3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03426

Details:

PFam ID : PF03426

PFam Domain Description : Carbohydrate binding domain (family 15)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03426	B3PDA8_CELJU_95_253	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03426	B3PDA8_CELJU_95_253	100

Sequence based PCA Plot of the family - PF03426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay