3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03423

Details:

PFam ID : PF03423

PFam Domain Description : Carbohydrate binding domain (family 25)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 196

Average sequence length: 82.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03423	E0CVS9_VITVI_208_261	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03423	Q5IX00_PROWI_4_60	100

Sequence based PCA Plot of the family - PF03423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=8
Motif3 Start=90 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay