3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03422

Details:

PFam ID : PF03422

PFam Domain Description : Carbohydrate binding module (family 6)

Number of Sequence in 50% Dataset : 377

Number of Sequence in Full Dataset : 1008

Average sequence length: 121.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03422	C6IZC0_9BACL_1_49	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03422	E9NSL2_9ZZZZ_146_235	98.7

Sequence based PCA Plot of the family - PF03422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=107 Length=8
Motif3 Start=91 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay