3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03418

Details:

PFam ID : PF03418

PFam Domain Description : Germination protease

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 224

Average sequence length: 198.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03418	E2SJF4_9FIRM_2_176	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03418	E4Q7P5_CALH1_248_327	100

Sequence based PCA Plot of the family - PF03418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=100 Length=17
Motif2 Start=299 Length=8
Motif3 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay