3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03417

Details:

PFam ID : PF03417

PFam Domain Description : Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 414

Average sequence length: 214.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03417	C6LFD9_9FIRM_97_376	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03417	Q8TP46_METAC_185_453	100

Sequence based PCA Plot of the family - PF03417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=250 Length=8
Motif2 Start=156 Length=8
Motif3 Start=54 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay