3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03415

Details:

PFam ID : PF03415

PFam Domain Description : Clostripain family

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 203

Average sequence length: 324.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03415	B9PHN2_TOXGO_1051_1240	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03415	Q8TIY6_METAC_66_593	100

Sequence based PCA Plot of the family - PF03415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=78 Length=8
Motif3 Start=231 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay