3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03414

Details:

PFam ID : PF03414

PFam Domain Description : Glycosyltransferase family 6

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 104

Average sequence length: 250.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03414	B2Z491_ALOSE_100_152	79.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03414	Q4SD84_TETNG_4_271	98.0

Sequence based PCA Plot of the family - PF03414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=239 Length=8
Motif2 Start=66 Length=8
Motif3 Start=8 Length=8
Motif4 Start=220 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay