3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03409

Details:

PFam ID : PF03409

PFam Domain Description : Transmembrane glycoprotein

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 69

Average sequence length: 311.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03409	Q9N4X1_CAEEL_144_320	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03409	A8XI72_CAEBR_39_453	100

Sequence based PCA Plot of the family - PF03409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=141 Length=8
Motif2 Start=7 Length=8
Motif3 Start=163 Length=8
Motif4 Start=329 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay