3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03407

Details:

PFam ID : PF03407

PFam Domain Description : Nucleotide-diphospho-sugar transferase

Number of Sequence in 50% Dataset : 170

Number of Sequence in Full Dataset : 382

Average sequence length: 194.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03407	F0YEQ2_9STRA_224_347	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03407	Q9FKR8_ARATH_28_226	98.4

Sequence based PCA Plot of the family - PF03407 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=206 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay