3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03405

Details:

PFam ID : PF03405

PFam Domain Description : Fatty acid desaturase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 266

Average sequence length: 275.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03405	C1AE61_GEMAT_8_319	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03405	Q3ETU0_BACTI_1_97	98.8

Sequence based PCA Plot of the family - PF03405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay