3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03404

Details:

PFam ID : PF03404

PFam Domain Description : Mo-co oxidoreductase dimerisation domain

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 885

Average sequence length: 118.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03404	Q7S3C2_NEUCR_581_644	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03404	C4QAA7_SCHMA_428_573	100

Sequence based PCA Plot of the family - PF03404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=114 Length=8
Motif2 Start=136 Length=11
Motif3 Start=44 Length=11
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay