3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03402

Details:

PFam ID : PF03402

PFam Domain Description : Vomeronasal organ pheromone receptor family, V1R

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 345

Average sequence length: 255.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03402	Q5J3D8_RAT_33_299	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03402	Q5J3D8_RAT_33_299	100

Sequence based PCA Plot of the family - PF03402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=95 Length=8
Motif3 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay