3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03401

Details:

PFam ID : PF03401

PFam Domain Description : Tripartite tricarboxylate transporter family receptor

Number of Sequence in 50% Dataset : 1010

Number of Sequence in Full Dataset : 3186

Average sequence length: 269.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03401	B1XVA3_POLNS_117_189	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03401	F2I2A1_9RICK_44_335	100

Sequence based PCA Plot of the family - PF03401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=11
Motif2 Start=241 Length=8
Motif3 Start=137 Length=20
Motif4 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay