3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03400

Details:

PFam ID : PF03400

PFam Domain Description : IS1 transposase

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 269

Average sequence length: 87.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03400	D0T2Q2_ACIRA_2_90	33.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03400	E0UM47_CYAP2_131_247	99.2

Sequence based PCA Plot of the family - PF03400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=27
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay