3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03392

Details:

PFam ID : PF03392

PFam Domain Description : Insect pheromone-binding family, A10/OS-D

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 317

Average sequence length: 91.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03392	D2SNS1_HELVI_1_46	32.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03392	Q9TWV5_PERAM_4_28	100

Sequence based PCA Plot of the family - PF03392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=86 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay