3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03391

Details:

PFam ID : PF03391

PFam Domain Description : Nepovirus coat protein, central domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 36

Average sequence length: 151.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03391	C5HUT4_GFLV_841_942	47.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03391	E0D3E8_9SECO_780_949	97.1

Sequence based PCA Plot of the family - PF03391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay