3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03390

Details:

PFam ID : PF03390

PFam Domain Description : 2-hydroxycarboxylate transporter family

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 162

Average sequence length: 372

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03390	A6QKM9_ONYPE_1_184	65.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03390	D4MHA2_9ENTE_23_310	100

Sequence based PCA Plot of the family - PF03390 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=415 Length=8
Motif3 Start=395 Length=8
Motif4 Start=233 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay