3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03389

Details:

PFam ID : PF03389

PFam Domain Description : MobA/MobL family

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 398

Average sequence length: 191.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03389	E5BPK6_9FUSO_1_94	85.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03389	A5Z7B0_9FIRM_70_255	100

Sequence based PCA Plot of the family - PF03389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay