3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03388

Details:

PFam ID : PF03388

PFam Domain Description : Legume-like lectin family

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 284

Average sequence length: 193.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03388	C5L7Q1_9ALVE_140_284	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03388	B6K1B4_SCHJY_24_234	100

Sequence based PCA Plot of the family - PF03388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=174 Length=17
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay