3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03387

Details:

PFam ID : PF03387

PFam Domain Description : Herpesvirus UL46 protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 19

Average sequence length: 422.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03387	A1YZN5_9ALPH_17_468	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03387	A1YZN5_9ALPH_17_468	100

Sequence based PCA Plot of the family - PF03387 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=199 Length=8
Motif2 Start=18 Length=8
Motif3 Start=320 Length=8
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay