3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03384

Details:

PFam ID : PF03384

PFam Domain Description : Drosophila protein of unknown function, DUF287

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 19

Average sequence length: 46.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03384	D7MWS8_ARALL_1_34	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03384	Q9ZQ04_ARATH_169_221	94.4

Sequence based PCA Plot of the family - PF03384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay