3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03381

Details:

PFam ID : PF03381

PFam Domain Description : LEM3 (ligand-effect modulator 3) family / CDC50 family

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 355

Average sequence length: 273.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03381	Q5CJP4_CRYHO_230_456	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03381	Q4TAR5_TETNG_53_420	100

Sequence based PCA Plot of the family - PF03381 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=50 Length=8
Motif3 Start=110 Length=8
Motif4 Start=192 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay