3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03380

Details:

PFam ID : PF03380

PFam Domain Description : Caenorhabditis protein of unknown function, DUF282

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 42

Average sequence length: 141.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03380	A8WUL2_CAEBR_24_195	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03380	A8WYR4_CAEBR_7_139	100

Sequence based PCA Plot of the family - PF03380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=88 Length=8
Motif3 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay