3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03377

Details:

PFam ID : PF03377

PFam Domain Description : Xanthomonas avirulence protein, Avr/PthA

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 83

Average sequence length: 196.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03377	C3PZY2_9BACE_141_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03377	D8TLI8_VOLCA_156_315	90.2

Sequence based PCA Plot of the family - PF03377 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=171 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay