3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03372

Details:

PFam ID : PF03372

PFam Domain Description : Endonuclease/Exonuclease/phosphatase family

Number of Sequence in 50% Dataset : 2368

Number of Sequence in Full Dataset : 8836

Average sequence length: 257.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03372	B5GW29_STRCL_11_277	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03372	A3VJN6_9RHOB_10_271	92.8

Sequence based PCA Plot of the family - PF03372 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=210 Length=8
Motif2 Start=157 Length=8
Motif3 Start=260 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay