3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03369

Details:

PFam ID : PF03369

PFam Domain Description : Herpesvirus UL3 protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 21

Average sequence length: 123.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03369	B0W7S3_CULQU_751_811	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03369	Q66086_9ALPH_56_150	100

Sequence based PCA Plot of the family - PF03369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=25 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay