3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03367

Details:

PFam ID : PF03367

PFam Domain Description : ZPR1 zinc-finger domain

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 364

Average sequence length: 153.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03367	E0SPS3_IGNAA_19_172	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03367	Q8IDC0_PLAF7_398_579	100

Sequence based PCA Plot of the family - PF03367 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=8
Motif4 Start=152 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay