3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03366

Details:

PFam ID : PF03366

PFam Domain Description : YEATS family

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 263

Average sequence length: 83.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03366	F1MNI7_BOVIN_1_58	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03366	A0CG76_PARTE_114_207	100

Sequence based PCA Plot of the family - PF03366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=35 Length=8
Motif3 Start=50 Length=14
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay