3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03363

Details:

PFam ID : PF03363

PFam Domain Description : Herpesvirus leader protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 78.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03363	Q69148_EBVG_1_24	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03363	Q9Q5L0_CHV12_1_166	100

Sequence based PCA Plot of the family - PF03363 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay