3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03362

Details:

PFam ID : PF03362

PFam Domain Description : Herpesvirus UL47 protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 21

Average sequence length: 408.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03362	E2IUC3_SHV1_163_482	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03362	TG47_EHV4_374_837	100

Sequence based PCA Plot of the family - PF03362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay