3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03360

Details:

PFam ID : PF03360

PFam Domain Description : Glycosyltransferase family 43

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 214

Average sequence length: 195.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03360	A8X675_CAEBR_21_193	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03360	E9CDK0_9EUKA_121_354	100

Sequence based PCA Plot of the family - PF03360 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay