3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03359

Details:

PFam ID : PF03359

PFam Domain Description : Guanylate-kinase-associated protein (GKAP) protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 135

Average sequence length: 295.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03359	B0WSB3_CULQU_6_142	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03359	F1Q6W2_DANRE_89_340	99.2

Sequence based PCA Plot of the family - PF03359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=110 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay