3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03352

Details:

PFam ID : PF03352

PFam Domain Description : Methyladenine glycosylase

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 995

Average sequence length: 164.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03352	F2UKU2_9EUKA_107_307	76.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03352	F2UKU2_9EUKA_107_307	100

Sequence based PCA Plot of the family - PF03352 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=18
Motif2 Start=1 Length=8
Motif3 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay