3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03350

Details:

PFam ID : PF03350

PFam Domain Description : Uncharacterized protein family, UPF0114

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 309

Average sequence length: 121.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03350	Q17YR5_HELAH_2_38	43.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03350	D8RDT7_SELML_1_85	100

Sequence based PCA Plot of the family - PF03350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=19
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay