3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03347

Details:

PFam ID : PF03347

PFam Domain Description : Vibrio thermostable direct hemolysin

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 10

Average sequence length: 121.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03347	B3IW79_VIBPA_25_110	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03347	Q5DMU5_VIBPA_25_189	100

Sequence based PCA Plot of the family - PF03347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay