3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03345

Details:

PFam ID : PF03345

PFam Domain Description : Oligosaccharyltransferase 48 kDa subunit beta

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 148

Average sequence length: 378.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03345	B7P159_IXOSC_101_170	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03345	A8PV02_MALGO_27_483	100

Sequence based PCA Plot of the family - PF03345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=8
Motif2 Start=348 Length=11
Motif3 Start=378 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay