3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03344

Details:

PFam ID : PF03344

PFam Domain Description : Daxx Family

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 61

Average sequence length: 399.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03344	B3RNE4_TRIAD_51_406	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03344	B7QEI0_IXOSC_26_244	95

Sequence based PCA Plot of the family - PF03344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=237 Length=8
Motif4 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay