3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03334

Details:

PFam ID : PF03334

PFam Domain Description : Na+/H+ antiporter subunit

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 600

Average sequence length: 82.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03334	D2TV37_CITRI_10_99	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03334	A6G6F1_9DELT_11_113	99.8

Sequence based PCA Plot of the family - PF03334 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=23
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay