3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03328

Details:

PFam ID : PF03328

PFam Domain Description : HpcH/HpaI aldolase/citrate lyase family

Number of Sequence in 50% Dataset : 390

Number of Sequence in Full Dataset : 1839

Average sequence length: 212.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03328	Q0CUN0_ASPTN_9_98	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03328	D1A7Z4_THECD_84_325	99.8

Sequence based PCA Plot of the family - PF03328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=11
Motif2 Start=1 Length=18
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay