3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03327

Details:

PFam ID : PF03327

PFam Domain Description : Herpesvirus capsid shell protein VP19C

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 41

Average sequence length: 269.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03327	Q66036_9ALPH_3_86	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03327	Q993F3_9GAMA_66_342	100

Sequence based PCA Plot of the family - PF03327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay