3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03324

Details:

PFam ID : PF03324

PFam Domain Description : Herpesvirus DNA helicase/primase complex associated protein

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 46

Average sequence length: 91.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03324	O57137_9BETA_1_48	60.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03324	D1FXX4_FHV1_256_357	100

Sequence based PCA Plot of the family - PF03324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay